Objects
Amamuddy, Olivier S, Bishop, Nigel T, Tastan Bishop, Özlem. Characterizing early drug resistance-related events using geometric ensembles from HIV protease dynamics:. 2018.
Amamuddy, Olivier S, Bishop, Nigel T, Tastan Bishop, Özlem. Improving fold resistance prediction of HIV-1 against protease and reverse transcriptase inhibitors using artificial neural networks:. 2017.
Amamuddy, Olivier S, Veldman, Wade, Manyumwa, Colleen, Khairallah, Afrah, Agajanian, Steve, Oluyemi, Odeyemi, Verkhivker, Gennady M, Tastan Bishop, Özlem. Integrated computational approaches and tools for allosteric drug discovery:. 2020.
Kimuda, Phillip M, Brown, David K, Amamuddy, Olivier S, Ross, Caroline J, Matovu, Enock, Tastan Bishop, Özlem. Computational analysis of missense mutations from the human Macrophage Migration Inhibitory Factor (MIF) protein by Molecular Dynamics Simulations and Dynamic Residue Network Analysis:. 2019.
Amamuddy, Olivier S, Verkhivker, Gennady M, Tastan Bishop, Özlem. Impact of emerging mutations on the dynamic properties the SARS-CoV-2 main protease: an in silico investigation. 2020.
Brown, David K, Penkler, David L, Amamuddy, Olivier S, Ross, Caroline J, Atilgan, Ali R, Atilgan, Canan, Tastan Bishop, Özlem. MD-TASK: a software suite for analyzing molecular dynamics trajectories. 2017.
Ross, Caroline J, Nizami, B, Glenister, Michael, Amamuddy, Olivier S, Atilgan, Ali R, Atilgan, Canan, Tastan Bishop, Özlem. MODE-TASK: Large-scale protein motion tools. 2018.
Amamuddy, Olivier S, Verkhivker, Gennady M, Tastan Bishop, Özlem. Impact of early pandemic stage mutations on molecular dynamics of SARS-CoV-2 Mpro:. 2020.
Amamuddy, Olivier S, Musyoka, Thommas M, Boateng, Rita A, Zabo, Sophakama, Tastan Bishop, Özlem. Determining the unbinding events and conserved motions associated with the pyrazinamide release due to resistance mutations of Mycobacterium tuberculosis pyrazinamidase:. 2020.